Malformed input off : 601 length : 1
WebCaused by: java.nio.charset.MalformedInputException: Input length = 1... 15 more The input bam files were generated in one cluster and I'm running GATK in a different computer cluster. If I try to run GATK (4.1.4.1) using the same commands in the same cluster where the bam files were generated, it runs smoothly. I have checked the md5sum of all ... Web8 feb. 2024 · What is version of Halo has the issue? 2.2. What database are you using? MySQL 5.7. What is your deployment method? Fat Jar. Your site address. No response
Malformed input off : 601 length : 1
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Web16 mrt. 2024 · Workflow for diagnosing SAM/BAM file errors with ValidateSamFile. 1. Generate summary of errors. First, run ValidateSamFile in SUMMARY mode in order to get a summary of everything that is missing or improperly formatted in your input file. We set MODE=SUMMARY explicitly because by default the tool would just emit details about … Web6 aug. 2024 · ERROR: "Upload failed Malformed input or input contains unmappable characters: ... 1) For Solution, enter CR with a Workaround if a direct Solution is not available. 2) For HOW TO, enter the procedure in steps. 3) For FAQ, keep your answer crisp with examples. 4) ...
Web27 apr. 2015 · 究其原因是因为文件名中文所致,而ZIPFile默认使用UTF-8,在遇到解压非UTF-8的时候就会报错 public ZipFile (File file, int mode) throws IOException { this (file, mode, StandardCharsets.UTF_8); } 最终我用的解决方法为 Charset gbk = Charset.forName ("GBK"); ZipFile zipFile = new ZipFile (zipFileName, gbk); 当然这个肯定不适用与所有环 … Web27 mrt. 2024 · Execution jacoco-site of goal org.jacoco:jacoco-maven-plugin:0.8.3:report-aggregate failed: malformed input off : 61255, length : 1: Input length = 1 -> [Help 1] I had to debug the plugin execution and found that org.jacoco.core.analysis.Analyzer was picking non .class files from target/classes folder that I had there like templates, etc.
WebI am running GATK 4.1.7.0 in a computer cluster using the following commands, gatk --java-options '-Xmx12G' HaplotypeCaller -R /Ref.fasta -I input._sorted_dedup_rg_real.bam -O … Web4 jan. 2024 · java: java.lang.IllegalArgumentException: MALFORMED idea运行tomcat时出现这个问题 这个地方右侧的Classpath中不能出现含有中文名的jar包。 一般来讲这 …
Web14 dec. 2024 · java.lang.IllegalArgumentException: malformed input off : 4, length : 1 at java.base/java.lang.StringCoding.throwMalformed (StringCoding.java:698) · Issue #20 · …
Web1 Answer Sorted by: 23 I've just fixed it by specifying alternative (non UTF-8) charset: Charset CP866 = Charset.forName ("CP866"); ZipFile zipFile = new ZipFile (zipArchive, CP866); In your case, you need to specify another charset. Try, CP437, for instance. Share Improve this answer Follow answered Jul 28, 2014 at 10:46 Slava Semushin paragraph bold htmlWeb2 feb. 2024 · Most of the rules process successfully, however the AnalyzeJavaFilesRuleProvider rule failed, apparently due to a problem unzipping a jar (Windup is being run against the compiled EAR file). The stack trace is below, and I've attached the output from Windup with some more context. … paragraph book fairWebA malformed-input error is reported when a sequence of input units is not well-formed. Such errors are described by instances of this class whose isMalformed method returns true and whose length method returns the length of the malformed sequence. There is one unique instance of this class for all malformed-input errors of a given length. paragraph breaks in htmlWebMalformedInputException: Input length = 1 at java. base / java. nio. charset. CoderResult. throwException (CoderResult. java: 274) at java. base / sun. nio. cs. StreamEncoder. … paragraph break in facebook commentWeb3 jun. 2015 · 1 Answer Sorted by: 41 You can try to utilize the correct encoding by using the Files.lines (Path path, Charset charset) form of the lines method ( javadocs ). Here's a list of supported encodings (for the Oracle JVM anyhow). This post indicates that "Cp1252" is Windows ANSI. Share Improve this answer Follow edited May 23, 2024 at 12:34 paragraph breakfast habitWeb> mvn package -e [INFO] Error stacktraces are turned on. paragraph builder worksheetWeb31 okt. 2024 · Introduce a filter into the RegexStringGenerator that prevents any characters that match a mask for a supplementary-plane-data-character from being emitted. Update the automaton, somehow, to have a limited upper bound for character ranges, i.e. \u0000-\uefff but more accurate to the unicode spec We're referencing the library so this wont be ... paragraph break in excel cell